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some pdfs can be found here
Brown, J. W., J. S. Rest, J. Garcia-Moreno, M. D. Sorenson, and D. P. Mindell. 2008. Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC Biology 2008, 6:6 doi:10.1186/1741-7007-6-6
Mindell, D. P. 2007. This land is your land. Evolutionary Psychology 5:605-611.
Johnson, J. A., K. K. Burnham, W. A. Burnham, and D. P. Mindell. 2007. Genetic structure identified among continental and island populations of gyrfalcons. Molecular Ecology 16:3145-3160.
Johnson, J. A., R. Thorstrom, and D. P. Mindell. 2007. Systematics and conservation of the hook-billed kite including the island taxa from Cuba and Grenada. Animal Conservation 10:349-359.
Lerner, H. R. L., M. C. Klaver and D. P. Mindell. 2007. Molecular phylogenetics of Buteoninae birds of prey (Aves: Accipitridae). The Auk In Press.
Brown, J. W., R. B. Payne, and D. P. Mindell. 2007. Nuclear DNA does not reconcile 'rocks' and 'clocks' in Neoaves: A Comment on Ericson et al. Biology Letters 2007 3:3; DOI 10.1098/rsbl.2006.0611
Mindell, D. P. 2006. The Evolving World: Evolution in Everyday Life. Harvard University Press. 341 pp.
Johnson, J. A., H. R. L. Lerner, Pamela C. Rasmussen and D. P. Mindell. 2006. Systematics within Gyps vultures: a clade at risk. BMC Evolutionary Biology 2006, 6:65.
Watanabe M., M. Nikaido, T. T. Tsuda, T. Kobayashi, D. P. Mindell, Y. Cao, N. Okada, and M. Hasegawa. 2006. New candidate species most closely related to penguins. Gene 378: 65-73.
Watanabe, M., M. Nikaido, T. T. Tsuda, H. Inoko, D. P. Mindell, K. Murata and N. Okada. 2006. The rise and fall of the CR1 subfamily in the lineage leading to penguins. Gene. 365:57-66.
Johnson, J. A., R. T. Watson, and D. P. Mindell. 2005. Prioritizing species conservation: does the Cape Verde kite exist? Proceedings of the Royal Society London B. 272:1365-1371.
Lerner, H. L. and D. P. Mindell. 2005. Phylogeny for eagles, Old World vultures and other Accipitridae taxa based on nuclear and mitochondrial DNA. Molecular Phylogenetics and Evolution 37:327-346.
Mindell, D. P. 2005. Evolution helps solve crimes. Pp. 173-177 in Cracraft, J. and R. Bybee (eds.) Evolutionary Science and Society: Educating a New Generation. Biological Sciences Curriculum Study, Colorado Springs, Colorado.
Hietpas, J., L. K. McMullan, D. P. Mindell, J. L. Hanson, and C. M. Rice. 2005. Keeping track of viruses. Pp. 55-97 in R. G. Breze, B. Budowle and S. E. Schutzer (eds.), Microbial and Viral Forensics. Wiley-Liss.
Mindell, D. P., J. S. Rest, and L. P. Villarreal. 2004. Viruses and the tree of life. Pp. 107-118 in Cracraft, J. and M. J. Donoghue (eds.), Assembling the Tree of Life. Oxford University Press, New York.
Cracraft, J., F. Keith Barker, M. J. Braun, J. Harshman, G. Dyke, J. Feinstein, S. Stanley, A. Cibois, P. Schikler, P. Beresford, J. García-Moreno, M. D. Sorenson, T. Yuri, and D. P. Mindell. 2004. Phylogenetic Relationships Among Modern Birds (Neornithes): Toward an Avian Tree of Life. Pp. 468-489 in Cracraft, J. and M. J. Donoghue (eds.), Assembling the Tree of Life. Oxford University Press, New York.
Rest J. S., and D. P. Mindell. 2003. SARS-CoV has a recombinant polymerase and coronaviruses have a history of host shifting. Infection, Genetics and Evolution 3:219-225.
Rest, J. R., J. C. Ast, C. C. Austin, P. J. Waddell, E. A. Tibbetts, J. M. Hay and D. P. Mindell. 2003. Molecular systematics of Reptilia and the tuatara mitochondrial genome. Molecular Phylogenetics and Evolution 29:289-297.
Lee, S-I. C. S. Parr, Y. Hwang, D. P. Mindell, and J. C. Choe. 2003. Phylogeny of magpies (genus Pica) inferred from mtDNA data. Molecular Phylogenetics and Evolution 29:250-257.
Sorenson, M. D., E. Oneal, J. García-Moreno, and D. P. Mindell. 2003. More taxa, more characters: the hoatzin problem is still unresolved. Molecular Biology and Evolution 20:1484-1499.
García-Moreno, J., M. D. Sorenson and D. P. Mindell. 2003. Congruent avian phylogenies inferred from mitochondrial and nuclear DNA sequences. Journal of Molecular Evolution 57:27-37.
Rest, J. S. and D. P. Mindell. 2003. Retroids in Archaea: phylogeny and lateral origins. Molecular Biology and Evolution 20:1134-1142.
Metzker, M. L., D. P. Mindell, X.-M. Liu, R. G. Ptak, R. A. Gibbs and D. M. Hillis. 2002. Molecular evidence of HIV-1 transmission in a U.S. criminal case. Proceedings of the National Academy of Sciences USA 99:14292-14297.
Dimcheff, D. D. , S. V. Drovetski, and D. P. Mindell. 2002. Molecular evolution and systematics of tetraoninae and other Galliformes using mitochondrial 12S and ND2 genes. Molecular Phylogenetics and Evolution 24:203-215.
Dimmic, M. W., J. S. Rest, D. P. Mindell, and R. A. Goldstein. 2002. rtREV: a substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. Journal of Molecular Evolution 55:65-73.
Yuri, T. and D. P. Mindell. 2002. Molecular phylogenetic analysis of nine-primaried oscines (Aves: Passeriformes: Fringillidae). Molecular Phylogenetics and Evolution 23:229-243.
Mindell, D. P. 2002. Birds. In M. Pagel, ed. Encyclopedia of Evolution. Vol. 1, pp. 110-117. Oxford University Press.
Meshnick, S. R., P. A. Hossler, K. S. Enger, P. Kazanjian, J. S. Rest, D. P. Mindell, B. Li, C.-H. Lee, L. F. Nimri, J. L. Carter, C. B. Beard, C. Del Rio,L. Huang. 2001. Distribution of DHPS Mutations Among ITS Subtypes of P. carinii f. sp. hominis. Journal of Eukaryotic Microbiology 126S-128S Suppl. S 2001.
Herlocher M. L., S. Elias, R. Truscon, S. Harrison, D. P. Mindell, C. Simon, and A. S. Monto. 2001. Ferrets as a transmission model for Influenza: Sequence changes in Type A (H3N2) virus. Journal of Infectious Diseases 184:542-546.
Mindell, D. P. and A. Meyer. 2001. Homology evolving. Trends in Ecology and Evolution 16:434-440.
Dimcheff, D. E., M. Krishnan, and D. P. Mindell. 2001. Evolution and characterization of Tetraonine Endogenous Retrovirus (TERV): a new virus related to avian sarcoma and leukosis viruses. Journal of Virology 75:2002-2009.
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