Daniel Southworth

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Assistant Professor of Biological Chemistry, Research Assistant Professor, Life Sciences Institute

Life Sciences Institute, 210 Washtenaw, Room 6026, Ann Arbor, MI 48109

Office Location(s): 6026 LSI
Phone: 734.764.8938

  • About

    Mechanisms that maintain the properly folded state of proteins and promote the degradation of misfolded and denatured proteins are fundamental to the homeostasis of the crowded cellular environment. Malfunction of these processes leads to protein aggregation and the progression of many diseases including Alzheimer’s disease and cancer. Molecular chaperones are at the interface of these processes, serving as a critical triage center for numerous substrate ‘client’ proteins including transcription regulators and cell cycle kinases.

    Our lab is focused on understanding at the structural level how molecular chaperones interact and coordinate decisions that determine the fate of a given client protein. Using cryo-electron microscopy (cryo-EM) we aim to determine the structure of functional molecular chaperone assemblies and identify protein:protein interactions and molecular mechanisms that are essential to the alternating pathways of protein degradation and activation.

    The tumor suppressor p53 protein is a member of a growing class of proteins that are intrinsically unstable, containing unstructured regions in the native state that are essential in regulation. Hsp90 and Hsp70 are central in activation and signal transduction of p53, as well as proteasome-directed degradation by interactions with the Chip ubiquitin ligase. Mutations, including those that occur in many tumor cells alter the conformational state of p53 and ultimately shift the highly regulated equilibrium between degradation and activation. Our current goals are to investigate the mechanisms of this protein triage system and determine cryo-EM structures of protein complexes at distinct stages and conformational states critical to p53 turnover.

    The dynamic protein:protein interactions central to molecular chaperone function and signal transduction mechanisms present tremendous challenges to structural studies. We employ powerful electron microscopy methods to visualize complex protein assemblies at the single molecule level that are otherwise impossible to dissect by other structural methods. Furthermore, we have developed key biochemical crosslinking methods to trap specific functional states and ensure homogeneity for 3-D structure determination.

    Broadly our lab is interested in understanding macromolecular organization and function of essential protein-protein interaction networks. While proteomic and computational methods have identified vast cellular communication networks, little is known about the transient, coordinated protein interaction mechanisms that underpin many essential pathways in signaling and protein homeostasis. Through our coupled biochemical and structural approaches we hope to obtain a detailed understanding of the structural organization of these dynamic processes and identify novel mechanisms and therapeutic targets fundamental to biology.

  • Education
    • B.S., University of California, Santa Cruz
    • Ph.D., Johns Hopkins University, School of Medicine
    • Postdoctoral, University of California, San Francisco
  • Selected Publications:
  • Articles